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  1. N. Kopell, H.J. Gritton, M.A. Whittington, M.A. Kramer, Beyond The Connectome: The Dynome, Neuron, 83(6), 1319-1328, 2014.

  2. R. B. Yaffe, P. Borger, P. Megevand, D. M. Groppe, M. A. Kramer, C. J. Chu, S. Santaniello, C. Meisel, A. Mehta, S. V. Sarma, Physiology of Functional and Effective Networks in Epilepsy, Clinical Neurophysiology, in press, 2014.

  3. K. Lepage, M. Kramer, C. Chu, A statistically robust EEG re-referencing procedure to mitigate reference effect, J. Neurosci Methods, 235(30),101-116, 2014.

  4. C. Chu, M. Kramer, J. Leahy, J. Pathmanathan, S. Cash, The maturation of cortical sleep rhythms and networks over early development, Clin Neurophysiol, 125(7), 1360-1370, 2014.

  5. E. Stephen, K. Lepage, U. Eden, J. Brumberg, F. Guenther, M. Kramer, Assessing dynamics, spatial scale, and uncertainty in task-related brain network analyses, Front. Comput. Neurosci. 8:31. doi: 10.3389/fncom.2014.00031, 2014.

  6. L. Meng, M. Kramer, S. Middleton, M. Whittington, U. Eden, A unified approach to linking experimental, statistical and computational analysis of spike train data, PLoS ONE 9(1): e85269. doi:10.1371/journal.pone.0085269, 2014.

  7. H. Rotstein, M. Kramer, T. Kaper, Introduction to the focus issue: Rhythms and Dynamic Transitions in Neurological Disease: Modeling, Computation, and Experiment, Chaos, 23, 046001, 2013.

  8. M. Kramer, U. Eden, Assessment of cross-frequency coupling with confidence using generalized linear models, J Neurosci Methods, 220(1):64-74, 2013.
    MATLAB code

  9. F. Gerhard, T. Kispersky, G. J. Gutierrez, E. Marder, M. Kramer, Uri Eden, Successful Reconstruction of a Physiological Circuit with Known Connectivity from Spiking Activity Alone. PLoS Comput Biol 9(7): e1003138, 2013.

  10. J. E. Drake, B. A. Darby, M.-A. Giasson, M. A. Kramer, R. P. Phillips, A. C. Finzi, The stoichiometry of root exudation - insights from a model and a field experiment in a temperate forest, Biogeosciences, 10, 821-838, 2013.

  11. M. A. Kramer, Wilson Truccolo, Uri T. Eden, Kyle Q. Lepage, Leigh R. Hochberg, Emad N. Eskandar, Joseph R. Madsen, Jong W. Lee, Atul Maheshwari, Eric Halgren, Catherine J. Chu, Sydney S. Cash, Human seizures self-terminate across spatial scales via a critical transition, Proc Nat Acad Sci USA, 109 (51) 21116-21121, 2012. PMCID: PMC3529091

  12. K. Q. Lepage, M. A. Kramer, U. T. Eden, Some sampling properties of common phase estimators, Neural Computation, 25, 1-21, 2012. PMCID: PMC3596472

  13. K. Q. Lepage, G. G. Gregoriou, M. A. Kramer, M. Aoi, S. J. Gotts, U. T. Eden, R. Desimone, A procedure for testing across-condition rhythmic spike-field association change, J Neurosci Methods, S0165-0270(12)00420-7, 2012.

  14. K. Q. Lepage, S. Ching, M. A. Kramer, Inferring evoked brain connectivity through adaptive perturbation, J Comp Neuro, 10.1007/s10827-012-0422-8, 2012.

  15. S. Ching, E. Brown, M. A. Kramer, Distributed control in a mean-field cortical network model: Implications for seizure suppression, Phys Rev E, 86, 021920, 2012.

  16. K. P. Lillis, M. A. Kramer, J. Mertz, K. Staley, J. A. White, Pyramidal cells accumulate chloride during preictal interneuronal bursts, Neurobiology of Disease 47, 358-366, 2012.

  17. J. Burke, M. Desroches, A. M. Barry, T. J. Kaper, M. A. Kramer, A showcase of torus canards in neuronal bursters, J Math Neuro, 2:3 doi:10.1186/2190-8567-2-3, 2012.

  18. C. Chu-Shore, M. A. Kramer, J. Pathmanathan, M. Bianchi, M. Westover, L. Wizon, and S. Cash, Emergence of stable functional networks in long-term human EEG, J Neurosci, 32(8): 2703-2713, 2012. PMCID: PMC3361717

  19. M. Desroches, J. Burke, T. J. Kaper, M. A. Kramer, Canards of mixed type: new dynamics in a neural burster, Phys Rev E, 85, 021920, 2012.

  20. M. A. Kramer and S. S. Cash, Epilepsy as a Disorder of Cortical Network Organization, The Neuroscientist, 10.1177/1073858411422754 2012.

  21. M. A. Kramer, U. T. Eden, K. Q. Lepage, E. D. Kolaczyk, M. T. Bianchi, S. S. Cash, Emergence of Persistent Networks in Long-Term Intracranial EEG Recordings, J Neurosci, 31(44):15757-15767, 2011. PMCID: PMC3226835sa

  22. L. Meng, M. A. Kramer, U. T. Eden, A sequential Monte Carlo approach to estimate biophysical neural models from spikes, J Neural Eng, 8:065006, 2011. PMCID: PMC3529721

  23. G. N. Benes, A. M. Barry, T. J. Kaper, M. A. Kramer, and J. Burke, An Elementary Model of Torus Canards, Chaos 21, 023131, 2011.

  24. N. Kopell, M. A. Whittington, M. A. Kramer, Neuronal assembly dynamics in the beta1 frequency range permits short-term memory, Proc Nat Acad Sci USA, 108(9):3779-84, 2011. PMC

  25. K. Q. Lepage, M. A. Kramer, U. T. Eden, The Dependence of Spike-Field Coherence on Expected Intensity, Neural Computation, 23(9):2209-41, 2011.

  26. C. J. Chu-Shore, M. A. Kramer, M. T. Bianchi, V. S. Caviness, and S. S. Cash, Network Analysis: Applications for the Developing Brain, J Child Neurol, 26(4):488-500, 2011.PMC

  27. M. A. Kramer, A primer on networks in neuroscience, in Network Approaches to Diseases of the Brain, eds. M. Bianchi, S. Cash, V. Caviness, Benthan Publishing, 2010.

  28. N. Kopell, M. A. Kramer, P. Malerba and M. A. Whittington, Are different rhythms good for different functions?, Front Hum Neurosci, 4:187, 2010. PMC

  29. M. A. Kramer, U. T. Eden, E. D. Kolaczyk, R. Zepeda, E. N. Eskandar, S. S. Cash, Coalescence and Fragmentation of Cortical Networks during Focal Seizures, J Neurosci, 30:10076-10085, 2010. PMC

  30. U. T. Eden and M. A. Kramer, Drawing inferences from Fano factor calculations, J Neurosci Meth, 190(1):149-152, 2010.

  31. A. B. L. Tort, A. Fontanini, M. A. Kramer, L. M. Jones, N. J. Kopell, D. B. Katz, Cortical networks produce three distinct 7-12 Hz rhythms during single sensory responses in the awake rat, J Neurosci, 30:4315-4324, 2010. PMC

  32. M. A. Kramer, U. T. Eden, S. S. Cash, E. D. Kolaczyk, Network inference with confidence from multivariate time series, Phys Rev E, 79: 061916, 2009.

  33. A. K. Roopun, M. A. Kramer, L. M. Carracedo, M. Kaiser, C. H. Davies, R. D. Traub, N. J. Kopell, M. A Whittington, (2008) Temporal interactions between cortical rhythms, Frontiers in Neuroscience, 2,2:145-154.

  34. A. B. L. Tort, M. A. Kramer, C. Thorn, D. J. Gibson, Y. Kubota, A. M. Graybiel, N. Kopell, Dynamic cross-frequency couplings of local field potential oscillations in rat striatum and hippocampus during performance of a T-maze task, Proc Nat Acad Sci, 105:51, 20517-20522, 2008.

  35. M. A. Kramer, Anita K. Roopun, Lucy M. Carracedo, Roger D. Traub, Miles A. Whittington, and Nancy J. Kopell. 2008, Rhythm Generation through Period Concatenation in Rat Somatosensory Cortex, PLoS Computational Biology, 4(9): e1000169 doi:10.1371/journal.pcbi.1000169

  36. M. A. Kramer, R. D. Traub, N. J, Kopell, New dynamics in cerebellar Purkinje cells: torus canards, Physical Review Letters, 101, 068103, 2008. [arXiv]

  37. M. A. Kramer, E. D. Kolaczyk, H. E. Kirsch, Emergent network topology at seizure onset in humans, Epilepsy Research, 79:2-3, 173-186, 2008.

  38. A. K. Roopun, M. A. Kramer, L. M. Carracedo, M. Kaiser, C. H. Davies, R. D. Traub, N. J. Kopell, M. A Whittington, Period concatenation underlies interactions between gamma and beta rhythms in neocortex Frontiers in Cellular Neuroscience 2:1, 2008.

  39. M. A. Kramer, A. B. L. Tort, N. J. Kopell, Sharp edge artifacts and spurious coupling in EEG frequency comodulation measures Journal of Neuroscience Methods, 170, (2): 352-357, 2008.

  40. M. A. Kramer, F. L. Chang, M. E. Cohen, D. Hudson, A. J. Szeri, Synchronization measures of the scalp electroencephalogram can discriminate healthy from Alzheimer's subjects, International Journal of Neural Systems, 17, (2): 1-9, 2007.

  41. M. A. Kramer, A. J. Szeri, J. W. Sleigh, and H. E. Kirsch, Mechanisms of seizure propagation in a cortical model, Journal of Computational Neuroscience, 22:1 February 2007. [CODE]

  42. M. A. Kramer, B. A. Lopour, H. E. Kirsch, and A. J. Szeri, Bifurcation control of a seizing human cortex, Physical Review E, 73: 041928 (2006). [CODE] [MISPRINTS]

  43. M. A. Kramer, Nonlinear dynamics and neural systems: synchronization and modeling, Ph.D. Dissertation, University of California, Berkeley, 2005.

  44. M. A. Kramer, H. E. Kirsch, and A. J. Szeri, Pathological pattern formation and cortical propagation of epileptic seizures, J. R. Soc. Interface, Volume 2, Issue 2, 113-127, March 2005. [PRESS RELEASE] [MISPRINTS]

  45. M. A. Kramer, E. Edwards, M. Soltani, M. S. Berger, R. T. Knight and A. J. Szeri,Synchronization measures of bursting data: Application to the electrocorticogram of an auditory event-related experiment, Physical Review E , 70: 011914 (2004). [CODE]

  46. M. A. Kramer and A. J. Szeri, Quantitative approximation of the cortical surface potential from EEG measurements, IEEE Transactions on Biomedical Engineering, 51 (8): 1358-1365, AUG 2004.

  47. G. Lodge, J. A. Walsh, M. A. Kramer, A trilinear three-body problem, International Journal of Bifurcation and Chaos, 13 (8): 2141-2155 AUG 2003.

  48. D. F. Styer, M. S. Balkin, K. M. Becker, M. R. Burns, C. E. Dudley, S. T. Forth, J. S. Gaumer, M. A. Kramer, D. C. Oertel, L. H. Park, M. T. Rinkoski, C. T. Smith and T. D. Wotherspoon, Nine formulations of quantum mechanics, American Journal of Physics, 70, (3): 288-297, 2002.

  49. Q. Z. Zhang, T. R. Hunter, J. Brand, T. K. Sridharan, S. Molinari, M. A. Kramer and R. Cesaroni, Search for CO outflows toward a sample of 69 high-mass protostellar candidates: Frequency of occurrence, Astrophysical Journal, 552, (2): L167-L170, 2001.

  50. D. R. Stinebring, M. A. McLaughlin, J. M. Cordes, K. M. Becker, J. E. E. Goodman, M. A. Kramer, J. L. Sheckard and C. T. Smith, Faint scattering around pulsars: Probing the interstellar medium on solar system size scales, Astrophysical Journal, 549, (1): L97-L100, 2001.